PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family E2F/DP
Protein Properties Length: 368aa    MW: 39332.7 Da    PI: 6.4137
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.54e-27114196271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr+++++   +++k+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Aco019970.1 114 SGRGLRQFSMR---VCKKVESkGRTTYNEVADELVAEfvdpnsnlvspdkqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 196
                  689********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.7E-1207367IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.4E-45109202IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-33113196IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.0E-25115196IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.16E-21116197IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.17E-41201304IPR014889Transcription factor DP, C-terminal
SMARTSM011381.2E-69203365IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-42203317No hitNo description
PfamPF087812.9E-40204325IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVSARRREDD DGGKSSASAR GFPGAGPGRA SRGAAAAAIS GAPSASTSAS AGSPSALSEA  60
AAAAGSDKTS ADPHGPDALP DDDDDAADAA PSPQGAASGK KKKRGARAVG GDKSGRGLRQ  120
FSMRVCKKVE SKGRTTYNEV ADELVAEFVD PNSNLVSPDK QQYDEKNIRR RVYDALNVLM  180
AMDIISKDKK EIQWKGLPRT SQSDVEGLKE ECITLKKRID KKAAYLQDLQ DQFIGLQNLV  240
QRNEQLYGSG NSPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDSYV  300
LKAMRFCESG ENNDACEPSS HAAEFSSSMD IYQQNRLTLP TRLNTTGMIP NSPPIPGILK  360
GRAKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35107201193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775137.11e-171PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-133DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A096RB501e-151A0A096RB50_MAIZE; Uncharacterized protein
STRINGGRMZM2G086072_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-119Transcription factor DP